STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY11290.1Dihydroorotate dehydrogenase electron transfer subunit. (269 aa)    
Predicted Functional Partners:
pyrD
Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
 
 0.999
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 
 0.997
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
 
 
 0.997
SCY41371.1
NADPH-dependent glutamate synthase beta chain.
 
 0.977
SCY44581.1
Orotate phosphoribosyltransferase.
  
 
 0.976
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 
 0.972
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.966
SCX85267.1
Glutamate synthase (NADPH/NADH) small chain.
 
 0.932
SCY40095.1
Glutamate synthase (NADPH/NADH) small chain.
 0.931
SCX85295.1
Glutamate synthase (ferredoxin).
     
 0.921
Your Current Organism:
Lachnospiraceae bacterium XBB2008
NCBI taxonomy Id: 1520826
Other names: L. bacterium XBB2008
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