STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY39309.1Uncharacterized membrane protein YczE. (223 aa)    
Predicted Functional Partners:
SCY39335.1
Stress responsive A/B Barrel Domain.
       0.727
SCY39271.1
Phosphoglycerate dehydrogenase.
       0.563
SCX84115.1
Protein of unknown function.
  
     0.507
SCY39375.1
Hypothetical protein.
       0.459
SCY39423.1
tRNA G18 (ribose-2'-O)-methylase SpoU.
 
     0.431
SCY39229.1
Putative esterase.
       0.422
Your Current Organism:
Lachnospiraceae bacterium XBB2008
NCBI taxonomy Id: 1520826
Other names: L. bacterium XBB2008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.