STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW99730.1Transcriptional regulator, TetR family. (182 aa)    
Predicted Functional Partners:
SCW99734.1
Transcriptional regulator, RpiR family.
     
 0.775
SCW99738.1
Hypothetical protein.
       0.773
cmk
Cytidylate kinase.
    
  0.728
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.686
SCW99748.1
Small subunit ribosomal protein S1.
       0.686
SCX04620.1
O-Antigen ligase.
  
     0.570
SCX15784.1
Hypothetical protein.
  
     0.554
SCW99664.1
CoA-substrate-specific enzyme activase, putative.
     
 0.505
SCW99727.1
Oxaloacetate decarboxylase, alpha subunit.
       0.500
SCW99695.1
Putative ABC-transporter type IV.
 
     0.492
Your Current Organism:
Lachnospiraceae bacterium YSD2013
NCBI taxonomy Id: 1520828
Other names: L. bacterium YSD2013
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.