STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX04339.1Chromosome partitioning protein, ParB family; Belongs to the ParB family. (295 aa)    
Predicted Functional Partners:
SCX04345.1
Chromosome partitioning protein.
 
 
 0.995
SCX09213.1
Chromosome partitioning protein.
 
 
 0.979
rsmG
16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.843
SCX04332.1
Protein of unknown function.
  
 
 0.832
SCX10833.1
GMP synthase (glutamine-hydrolysing).
    
 0.770
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
 0.770
SCX04324.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
   
   0.748
SCW99932.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
  
 0.737
SCX04310.1
Protein of unknown function.
       0.701
SCX04317.1
seryl-tRNA synthetase.
       0.671
Your Current Organism:
Lachnospiraceae bacterium YSD2013
NCBI taxonomy Id: 1520828
Other names: L. bacterium YSD2013
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