STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX04558.1Multidrug efflux pump subunit AcrA (membrane-fusion protein). (550 aa)    
Predicted Functional Partners:
SCX04561.1
MacB-like core domain-containing protein.
 
 0.980
SCX04566.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
 
  0.964
SCX04544.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
 
  0.963
SCX04551.1
Multiple sugar transport system permease protein.
 
 
  0.960
SCX04549.1
Multiple sugar transport system permease protein.
 
 
  0.953
SCX04913.1
Putative ABC transport system permease protein.
  
 0.935
SCX02266.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
 
  0.888
SCX04724.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
 
  0.888
SCX07191.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
 
  0.888
SCX15604.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
 
  0.885
Your Current Organism:
Lachnospiraceae bacterium YSD2013
NCBI taxonomy Id: 1520828
Other names: L. bacterium YSD2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.