SFW26183.1 protein (Prevotellaceae bacterium HUN156)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFW26183.1

Helix-turn-helix domain-containing protein. (550 aa)

Predicted Functional Partners:

SFW39736.1

0.707

SFW22645.1

0.619

SFW38220.1

0.603

SFW11880.1

0.594

SFW12460.1

0.541

SFW45631.1

0.528

rpoA

0.521

SFW34701.1

0.495

SFW26197.1

0.458

SFW43796.1

0.451

Your Current Organism:

Prevotellaceae bacterium HUN156

NCBI taxonomy Id: 1520830
Other names: P. bacterium HUN156

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFW11880.1	SFW26183.1	SAMN02910409_0358	SAMN02910409_1133	AraC-type DNA-binding protein.	Helix-turn-helix domain-containing protein.	0.594
SFW11880.1	SFW38220.1	SAMN02910409_0358	SAMN02910409_1926	AraC-type DNA-binding protein.	Glutamate synthase (NADPH/NADH) large chain.	0.603
SFW11880.1	SFW39736.1	SAMN02910409_0358	SAMN02910409_2055	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.484
SFW11880.1	SFW45631.1	SAMN02910409_0358	SAMN02910409_0009	AraC-type DNA-binding protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.516
SFW11880.1	rpoA	SAMN02910409_0358	SAMN02910409_2325	AraC-type DNA-binding protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.521
SFW12460.1	SFW22645.1	SAMN02910409_0410	SAMN02910409_0965	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.997
SFW12460.1	SFW26183.1	SAMN02910409_0410	SAMN02910409_1133	AraC-type DNA-binding protein.	Helix-turn-helix domain-containing protein.	0.541
SFW12460.1	SFW38220.1	SAMN02910409_0410	SAMN02910409_1926	AraC-type DNA-binding protein.	Glutamate synthase (NADPH/NADH) large chain.	0.764
SFW12460.1	SFW45631.1	SAMN02910409_0410	SAMN02910409_0009	AraC-type DNA-binding protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
SFW12460.1	rpoA	SAMN02910409_0410	SAMN02910409_2325	AraC-type DNA-binding protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.648
SFW22645.1	SFW12460.1	SAMN02910409_0965	SAMN02910409_0410	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.997
SFW22645.1	SFW26183.1	SAMN02910409_0965	SAMN02910409_1133	AraC-type DNA-binding protein.	Helix-turn-helix domain-containing protein.	0.619
SFW22645.1	SFW34701.1	SAMN02910409_0965	SAMN02910409_1711	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.536
SFW22645.1	SFW38220.1	SAMN02910409_0965	SAMN02910409_1926	AraC-type DNA-binding protein.	Glutamate synthase (NADPH/NADH) large chain.	0.764
SFW22645.1	SFW39736.1	SAMN02910409_0965	SAMN02910409_2055	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.570
SFW22645.1	SFW45631.1	SAMN02910409_0965	SAMN02910409_0009	AraC-type DNA-binding protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.999
SFW22645.1	rpoA	SAMN02910409_0965	SAMN02910409_2325	AraC-type DNA-binding protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.648
SFW26183.1	SFW11880.1	SAMN02910409_1133	SAMN02910409_0358	Helix-turn-helix domain-containing protein.	AraC-type DNA-binding protein.	0.594
SFW26183.1	SFW12460.1	SAMN02910409_1133	SAMN02910409_0410	Helix-turn-helix domain-containing protein.	AraC-type DNA-binding protein.	0.541
SFW26183.1	SFW22645.1	SAMN02910409_1133	SAMN02910409_0965	Helix-turn-helix domain-containing protein.	AraC-type DNA-binding protein.	0.619