node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rpsB | SAMN02910409_2299 | SAMN02910409_2062 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplD | rpsC | SAMN02910409_2299 | SAMN02910409_2304 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsG | SAMN02910409_2299 | SAMN02910409_2290 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rplD | rpsJ | SAMN02910409_2299 | SAMN02910409_2292 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplD | rpsL | SAMN02910409_2299 | SAMN02910409_2289 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rplD | rpsM | SAMN02910409_2299 | SAMN02910409_2322 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplD | rpsN | SAMN02910409_2299 | SAMN02910409_2311 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rplD | rpsO | SAMN02910409_2299 | SAMN02910409_1266 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.998 |
rplD | rpsQ | SAMN02910409_2299 | SAMN02910409_2307 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
rplD | rpsS | SAMN02910409_2299 | SAMN02910409_2302 | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
rpsB | rplD | SAMN02910409_2062 | SAMN02910409_2299 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rpsB | rpsC | SAMN02910409_2062 | SAMN02910409_2304 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rpsB | rpsG | SAMN02910409_2062 | SAMN02910409_2290 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsJ | SAMN02910409_2062 | SAMN02910409_2292 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsB | rpsL | SAMN02910409_2062 | SAMN02910409_2289 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rpsB | rpsM | SAMN02910409_2062 | SAMN02910409_2322 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rpsB | rpsN | SAMN02910409_2062 | SAMN02910409_2311 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rpsB | rpsO | SAMN02910409_2062 | SAMN02910409_1266 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rpsB | rpsQ | SAMN02910409_2062 | SAMN02910409_2307 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
rpsB | rpsS | SAMN02910409_2062 | SAMN02910409_2302 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |