STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IN07_22755Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
IN07_22750
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.728
IN07_23070
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.719
IN07_02475
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.687
IN07_04890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.620
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
       0.597
IN07_12775
Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.591
IN07_00960
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.457
IN07_19920
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.405
Your Current Organism:
Modestobacter caceresii
NCBI taxonomy Id: 1522368
Other names: CECT 9023, DSM 101691, M. caceresii, Modestobacter caceresii Busarakam et al. 2017, Modestobacter sp. KNN45-1a, Modestobacter sp. KNN45-2b, Modestobacter sp. KNN45-3b, strain KNN 45-2b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.