STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lstRLineage-specific thermal regulator protein; Part of sigC operon that is induced by temperature upshift; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
OAS89442.1
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
 
    0.896
A6K24_02485
Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.885
OAS87114.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.653
OAS82203.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
OAS89514.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
OAS84670.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
OAS84129.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.559
OAS82714.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
OAS89434.1
Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
OAS84130.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
Your Current Organism:
Bacillus litoralis
NCBI taxonomy Id: 152268
Other names: B. litoralis, Bacillus litoralis Yoon and Oh 2005, DSM 16303, KCTC 3898, strain SW-211
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.