STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ53798.1Sialic acid biosynthesis protein NeuD. (219 aa)    
Predicted Functional Partners:
ALQ53799.1
Alcohol dehydrogenase; Pfam:pfam00483 Nucleotidyl transferase.
 
     0.947
ALQ53795.1
Pfam:pfam01041 DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.946
wecB-2
Polysialic acid biosynthesis protein P7; Pfam:pfam02350 UDP-N-acetylglucosamine 2-epimerase.
 
     0.946
neuB
N-acetylneuraminate synthase; Pfam:pfam03102 NeuB family.
 
     0.940
neuA
CMP-N-acetlyneuraminic acid synthetase; Pfam:pfam02348 Cytidylyltransferase.
 
     0.918
ALQ53794.1
UDP-N-acetylglucosamine 4,6-dehydratase; Pfam:pfam02719 Polysaccharide biosynthesis protein.
 
     0.910
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  
 0.829
wecC
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Pfam:pfam03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.732
ALQ53801.1
Asparagine synthase.
       0.561
birA
biotin--[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
  
 0.533
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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