Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALQ54124.1Hypothetical protein; Pfam:pfam01852 START domain. (225 aa)    
Predicted Functional Partners:
ygiF
Adenylate cyclase; Pfam:pfam01928 CYTH domain.
       0.773
ALQ54600.1
Pfam:pfam12697 Alpha/beta hydrolase family.
  
     0.597
ALQ53589.1
Pfam:pfam13460 NADH(P)-binding.
  
     0.497
ygiM
Pfam:pfam08239 Bacterial SH3 domain.
       0.485
ALQ53987.1
Amino acid ABC transporter; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
  
     0.483
ALQ56683.1
Pfam:pfam13622 Thioesterase-like superfamily.
  
     0.463
ALQ54159.1
Acid phosphatase; Pfam:pfam00149 Calcineurin-like phosphoesterase.
  
     0.417
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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