Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yfbK-2IMP dehydrogenase; Pfam:pfam13519 von Willebrand factor type A domain. (327 aa)    
Predicted Functional Partners:
ALQ54316.1
Protein BatD; Pfam:pfam13584 Oxygen tolerance.
 
   
 0.971
ALQ54320.1
Pfam:pfam01882 Protein of unknown function DUF58.
 
  
 0.971
yfbK
TPR domain protein in aerotolerance operon; Pfam:pfam13519 von Willebrand factor type A domain.
 
   
 0.968
moxR
Pfam:pfam07726 ATPase family associated with various cellular activities (AAA).
 
  
 0.965
ALQ54319.1
Hypothetical protein; Pfam:pfam14316 Domain of unknown function (DUF4381).
 
    0.891
ALQ54314.1
Pfam:pfam11859 Protein of unknown function (DUF3379).
       0.801
rpoE-2
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.801
fadA-2
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
       0.691
fadJ
Fatty acid oxidation complex subunit alpha; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. Belongs to the enoyl-CoA hydratase/isomerase family. In the central section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
       0.691
moxR-2
ATPase AAA; Pfam:pfam07726 ATPase family associated with various cellular activities (AAA).
 
  
 0.511
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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