STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ54545.1Pfam:pfam00534 Glycosyl transferases group 1. (358 aa)    
Predicted Functional Partners:
paaK
Capsule biosynthesis protein CapK.
 
     0.852
wcaJ
Capsular polysaccharide biosynthesis protein; Pfam:pfam02397 Bacterial sugar transferase.
 
  
 0.834
ALQ54539.1
Pfam:pfam13440 Polysaccharide biosynthesis protein.
 
  
 0.828
ALQ54546.1
Aspartate-semialdehyde dehydrogenase; Pfam:pfam07470 Glycosyl Hydrolase Family 88.
 
     0.823
tagA
Pfam:pfam03808 Glycosyl transferase WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
 
 
 0.818
cysE
Serine acetyltransferase-related protein; Pfam:pfam00132 Bacterial transferase hexapeptide (six repeats).
  
  
 0.800
ALQ54637.1
Lipase-like protein; Pfam:pfam12262 Bacterial virulence factor lipase N-terminal.
   
 
 0.770
ALQ54541.1
Pfam:pfam00534 Glycosyl transferases group 1.
 
    
0.713
ALQ54542.1
O-Antigen ligase family protein.
  
  
 0.672
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.651
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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