STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ54630.1Hypothetical protein; Pfam:pfam01891 Cobalt uptake substrate-specific transmembrane region. (215 aa)    
Predicted Functional Partners:
rlmA1
Putative 23S rRNA m1G745 methyltransferase; Pfam:pfam13847 Methyltransferase domain.
       0.890
xthA
Exonuclease III; Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family.
       0.890
ALQ54632.1
Exonuclease III.
       0.711
ALQ54489.1
CcoH-like protein; Pfam:pfam05751 FixH.
  
     0.626
ALQ55518.1
Flagellar protein FlgP; Pfam:pfam02169 LPP20 lipoprotein.
  
     0.528
ALQ54844.1
Pfam:pfam11227 Protein of unknown function (DUF3025).
  
     0.513
ALQ53451.1
DnaJ-class molecular chaperone; Pfam:pfam12339 DNA-J related protein.
  
     0.511
ALQ55519.1
Hypothetical protein.
  
     0.462
ALQ54567.1
Pfam:pfam11279 Protein of unknown function (DUF3080).
  
     0.457
ALQ54912.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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