STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ54957.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
phoP
Response regulator in two-component regulatory system with PhoQ; Pfam:pfam00072 Response regulator receiver domain.
       0.864
phoQ
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.864
ALQ54954.1
Hypothetical protein.
       0.794
ALQ54953.1
BolA family transcriptional regulator; Pfam:pfam03795 YCII-related domain.
       0.738
ALQ54952.1
Transporter; Pfam:pfam00209 Sodium:neurotransmitter symporter family.
       0.440
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.