STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ55285.1Competence protein ComFB; Pfam:pfam10719 Late competence development protein ComFB. (90 aa)    
Predicted Functional Partners:
ALQ55286.1
Pfam:pfam10689 Protein of unknown function (DUF2496).
       0.864
dinG
ATP-dependent DNA helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase.
       0.803
ALQ55282.1
Membrane protein; Pfam:pfam01925 Sulfite exporter TauE/SafE.
       0.803
priC
Pfam:pfam07445 Primosomal replication protein priB and priC.
       0.803
ALQ55284.1
Pfam:pfam00850 Histone deacetylase domain.
       0.803
fliL
Flagellar basal body-associated protein FliL-like protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.738
polB
Pfam:pfam00136 DNA polymerase family B.
       0.736
ALQ54379.1
Hypothetical protein.
  
     0.708
cheW-2
Chemotaxis protein CheW; Pfam:pfam01584 CheW-like domain.
  
     0.669
cheZ
Protein phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
  
     0.642
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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