STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ55287.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
flgC
LfgC; Pfam:pfam06429 Flagellar basal body rod FlgEFG protein C-terminal; Belongs to the flagella basal body rod proteins family.
    
   0.591
flgC-2
Flagellar biosynthesis cell-proximal portion of basal-body rod; Pfam:pfam06429 Flagellar basal body rod FlgEFG protein C-terminal; Belongs to the flagella basal body rod proteins family.
    
   0.591
hscA
Molecular chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
   
  0.534
yegD
Chaperone; Pfam:pfam00012 Hsp70 protein.
   
  0.534
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
  0.534
ALQ54163.1
Pfam:pfam00850 Histone deacetylase domain.
    
  0.509
ALQ55284.1
Pfam:pfam00850 Histone deacetylase domain.
    
  0.509
ALQ55953.1
Deacetylase; Pfam:pfam00850 Histone deacetylase domain.
    
  0.509
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
     
  0.434
ALQ55518.1
Flagellar protein FlgP; Pfam:pfam02169 LPP20 lipoprotein.
    
 
 0.434
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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