Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALQ55299.1Hypothetical protein; Pfam:pfam06527 TniQ. (391 aa)    
Predicted Functional Partners:
ALQ55296.1
Pfam:pfam09618 CRISPR-associated protein (Cas_Csy4).
   
   0.977
ALQ55297.1
Pfam:pfam09615 CRISPR-associated protein (Cas_Csy3).
       0.864
ALQ55298.1
Pfam:pfam09614 CRISPR-associated protein (Cas_Csy2).
       0.864
vgrG
Rhs element Vgr protein; Pfam:pfam05954 Phage late control gene D protein (GPD).
  
  0.708
ALQ55300.1
Hypothetical protein.
       0.483
yhdJ
Pfam:pfam01555 DNA methylase.
  
    0.476
ALQ54177.1
Lipase; Pfam:pfam01764 Lipase (class 3).
     
  0.411
ALQ56272.1
Hypothetical protein.
     
  0.411
ALQ56274.1
Hypothetical protein.
     
  0.411
ALQ56523.1
Type VI secretion protein; Pfam:pfam05488 PAAR motif.
     
  0.411
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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