STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ55303.1Putative transcriptional regulator; Pfam:pfam01381 Helix-turn-helix. (100 aa)    
Predicted Functional Partners:
hipA
Amidophosphoribosyltransferase; Pfam:pfam07804 HipA-like C-terminal domain.
  
 
 0.734
ALQ55744.1
Beta-glucanase; Pfam:pfam00722 Glycosyl hydrolases family 16.
  
     0.480
ALQ55308.1
Endonuclease; Pfam:pfam08722 TnsA endonuclease N terminal.
 
     0.473
ALQ55307.1
Integrase catalytic subunit; Pfam:pfam00665 Integrase core domain.
 
     0.429
ALQ55306.1
Hypothetical protein; Pfam:pfam13401 AAA domain.
  
     0.415
moeB
Molybdopterin-synthase adenylyltransferase; Pfam:pfam00899 ThiF family.
   
 
 0.406
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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