STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppDDppD; Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily. (330 aa)    
Predicted Functional Partners:
dppB
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
  
 0.998
dppC
DppC; Pfam:pfam12911 N-terminal TM domain of oligopeptide transport permease C.
 
 0.998
dppF
DppF; Pfam:pfam00005 ABC transporter.
 
 
0.990
dppA
ABC transporter periplasmic peptide-binding protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
 
 
 0.985
ALQ55765.1
Pfam:pfam00005 ABC transporter.
 
  
 
0.944
lolD
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
  
 
0.943
pstB
Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
  
 
0.939
afuC
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 
0.879
pspF
Transcriptional activator of phage shock proteins (EBP); Pfam:pfam00158 Sigma-54 interaction domain.
       0.877
mlaF
Pfam:pfam00005 ABC transporter.
 
    
0.874
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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