STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALQ56452.1Pfam:pfam05960 Bacterial protein of unknown function (DUF885). (575 aa)    
Predicted Functional Partners:
phrB-2
Pfam:pfam03441 FAD binding domain of DNA photolyase.
       0.493
ALQ54495.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.484
ALQ56453.1
Hypothetical protein; Pfam:pfam13875 Domain of unknown function (DUF4202).
       0.480
ALQ55279.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.478
ALQ54372.1
Pfam:pfam04389 Peptidase family M28.
  
     0.440
ALQ55403.1
Hypothetical protein.
 
     0.434
ALQ56454.1
GTP-binding protein EngA; Pfam:pfam13453 Transcription factor zinc-finger.
       0.406
Your Current Organism:
Pseudoalteromonas issachenkonii
NCBI taxonomy Id: 152297
Other names: CIP 106858, DSM 15925, KCTC 12958, KMM 3549, LMG 19697, LMG:19697, P. issachenkonii, Pseudoalteromonas issachenkonii Ivanova et al. 2002, Pseudoalteromonas sp. F13, Pseudoalteromonas sp. F2, Pseudoalteromonas sp. KMM 3549
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