STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05660464_1089Glycosyltransferase involved in cell wall bisynthesis. (381 aa)    
Predicted Functional Partners:
SAMN05660464_1093
O-antigen ligase.
 
    0.907
SAMN05660464_1090
Polysaccharide transporter, PST family.
 
    0.903
SAMN05660464_1094
Undecaprenyl-phosphate glucose phosphotransferase.
 
 
 0.881
SAMN05660464_1088
Glycosyltransferase involved in cell wall bisynthesis.
 
    
0.840
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.702
SAMN05660464_1092
Glycosyltransferase involved in cell wall bisynthesis.
 
    
0.700
SAMN05660464_2180
UDP-glucose 4-epimerase.
  
 
  0.659
SAMN05660464_3241
Malto-oligosyltrehalose trehalohydrolase.
   
 0.616
SAMN05660464_1091
Capsular polysaccharide biosynthesis protein.
       0.584
SAMN05660464_3811
Phosphoglucomutase.
   
  0.574
Your Current Organism:
Geodermatophilus dictyosporus
NCBI taxonomy Id: 1523247
Other names: ATCC 25080, CBS 234.69, CCUG 62970, DSM 43161, G. dictyosporus, Geodermatophilus dictyosporus Montero-Calasanz et al. 2015 emend. Montero-Calasanz et al. 2017, Geodermatophilus obscurus subsp. dictyosporus, Geodermatophilus sp. DSM 44208, Geodermatophilus sp. G-5, IFO 13317, KCC A-0154, MTCC 11558, NBRC 13317, strain G-5
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