STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IP79_12915Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
IP79_12905
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.987
IP79_12890
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.972
IP79_12895
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.972
IP79_12900
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.960
IP79_12910
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.960
IP79_12885
Type VI secretion protein; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.866
IP79_11600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
IP79_12920
Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.719
IP79_10075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
IP79_10425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
Your Current Organism:
Porphyrobacter sp. AAP60
NCBI taxonomy Id: 1523423
Other names: P. sp. AAP60
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.