STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IP81_10895NADPH:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
IP81_00865
Nodulation protein NodN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.797
IP81_04650
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.780
IP81_11970
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.646
IP81_11795
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.616
leuD
3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.592
IP81_09015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.586
IP81_03070
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.574
IP81_19365
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.557
IP81_04920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.506
IP81_00915
acetyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.462
Your Current Organism:
Novosphingobium sp. AAP83
NCBI taxonomy Id: 1523425
Other names: N. sp. AAP83
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