STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IP81_16415Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)    
Predicted Functional Partners:
IP81_16420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
IP81_11970
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.504
hisE
phosphoribosyl-ATP pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.463
IP81_16425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.454
IP81_16910
Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.
  
    0.429
IP81_00895
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.404
Your Current Organism:
Novosphingobium sp. AAP83
NCBI taxonomy Id: 1523425
Other names: N. sp. AAP83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.