STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IP83_01000Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)    
Predicted Functional Partners:
IP83_08990
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.795
parC
DNA topoisomerase IV; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
       0.774
IP83_07405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.717
IP83_11655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.715
IP83_00590
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.585
IP83_13830
acetyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.564
IP83_16860
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.518
IP83_04645
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.463
Your Current Organism:
Novosphingobium sp. AAP93
NCBI taxonomy Id: 1523427
Other names: N. sp. AAP93
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.