STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFE12461.1Cation diffusion facilitator family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
    0.776
OFE12462.1
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.588
OFE12463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.569
OFE12464.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
OFE12475.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.542
OFE11556.1
Flagellar basal-body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
    
 
 0.457
Your Current Organism:
Pseudohongiella acticola
NCBI taxonomy Id: 1524254
Other names: CECT 8627, KCTC 42131, Nonhongiella sp. GBSW-5, P. acticola, Pseudohongiella acticola Park et al. 2015, Pseudohongiella sp. GBSW-5, strain GBSW-5
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