STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX84_08635TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
IX84_14465
Biotin attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
IX84_08630
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.613
IX84_14830
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
IX84_26325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
IX84_28105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.494
IX84_08210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
IX84_28525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.451
IX84_04390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.430
Your Current Organism:
Phaeodactylibacter xiamenensis
NCBI taxonomy Id: 1524460
Other names: KCTC 32575, MCCC 1F01213, P. xiamenensis, Phaeodactylibacter xiamenensis Chen et al. 2014, Saprospiraceae bacterium KD52, bacterium KD52, strain KD52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.