IX84_09720 protein (Phaeodactylibacter xiamenensis)

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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[Homology]

Score

IX84_09720

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)

Predicted Functional Partners:

IX84_30215

0.613

IX84_00730

0.499

IX84_20540

0.499

IX84_09725

0.472

IX84_20755

0.429

IX84_04530

0.413

Your Current Organism:

Phaeodactylibacter xiamenensis

NCBI taxonomy Id: 1524460
Other names: KCTC 32575, MCCC 1F01213, P. xiamenensis, Phaeodactylibacter xiamenensis Chen et al. 2014, Saprospiraceae bacterium KD52, bacterium KD52, strain KD52

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Browse interactions in tabular form:

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

15

PPI enrichment p-value:

4.44e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0044781

Bacterial-type flagellum organization

4 of 17

1.88

1.66

0.00038

GO:0097588

Archaeal or bacterial-type flagellum-dependent cell motility

4 of 32

1.61

1.32

0.0012

GO:0009306

Protein secretion

4 of 35

1.57

1.29

0.0012

GO:0071973

Bacterial-type flagellum-dependent cell motility

3 of 22

1.64

1.1

0.0050

GO:0006935

Chemotaxis

3 of 22

1.64

1.1

0.0050

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003774

Cytoskeletal motor activity

5 of 7

2.36

3.68

5.44e-08

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009288

Bacterial-type flagellum

7 of 27

1.92

3.94

1.72e-10

GO:0009425

Bacterial-type flagellum basal body

5 of 20

1.91

2.91

2.39e-07

GO:0005886

Plasma membrane

7 of 634

0.55

0.36

0.0238

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1651

Bacterial-type flagellum basal body, and Bacterial flagellum biogenesis

11 of 21

2.23

8.18

3.52e-21

CL:1682

Cytoskeletal motor activity

5 of 5

2.51

4.49

1.76e-09

CL:1653

Bacterial-type flagellum basal body, and Bacterial flagellum biogenesis

5 of 14

2.06

3.31

7.37e-08

CL:1656

Bacterial-type flagellum basal body, distal rod, and Flagellar basal body rod protein, conserved site

2 of 7

1.97

0.9

0.0191

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02040

Flagellar assembly

11 of 42

1.93

6.01

3.36e-19

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009288

Bacterial-type flagellum

9 of 31

1.97

5.19

1.78e-14

GOCC:0009425

Bacterial-type flagellum basal body

7 of 20

2.05

4.56

2.03e-11

GOCC:0030257

Type III protein secretion system complex

2 of 2

2.51

1.4

0.0027

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0282

Flagellum

8 of 21

2.09

5.28

2.28e-13

KW-1005

Bacterial flagellum biogenesis

4 of 4

2.51

3.52

1.81e-07

KW-1006

Bacterial flagellum protein export

3 of 3

2.51

2.52

1.84e-05

KW-0283

Flagellar rotation

3 of 5

2.29

2.27

4.29e-05

KW-0145

Chemotaxis

3 of 7

2.14

2.09

7.85e-05

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01052

Type III flagellar switch regulator (C-ring) FliN C-term

2 of 2

2.51

0.85

0.0285

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node1	node2	node1 annotation	node2 annotation	score
IX84_00730	IX84_09720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
IX84_04530	IX84_09720	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
IX84_09720	IX84_00730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
IX84_09720	IX84_04530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
IX84_09720	IX84_09725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.472
IX84_09720	IX84_20540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
IX84_09720	IX84_20755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
IX84_09720	IX84_30215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GbsR family.	0.613
IX84_09725	IX84_09720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
IX84_20540	IX84_09720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
IX84_20755	IX84_09720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
IX84_20755	IX84_30215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GbsR family.	0.470
IX84_30215	IX84_09720	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GbsR family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
IX84_30215	IX84_20755	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GbsR family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470