STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX84_10810Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1082 aa)    
Predicted Functional Partners:
IX84_10805
Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.675
IX84_02220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
 
  
 0.665
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.561
IX84_09095
Hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
  
  
 0.554
IX84_03495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
IX84_15360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
IX84_28740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
IX84_06920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
IX84_19440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
IX84_26055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.519
Your Current Organism:
Phaeodactylibacter xiamenensis
NCBI taxonomy Id: 1524460
Other names: KCTC 32575, MCCC 1F01213, P. xiamenensis, Phaeodactylibacter xiamenensis Chen et al. 2014, Saprospiraceae bacterium KD52, bacterium KD52, strain KD52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.