STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX84_228704,5-dihydroxyphthalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)    
Predicted Functional Partners:
IX84_24710
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.710
IX84_22875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.680
IX84_22880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.600
IX84_10120
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.545
IX84_26550
Pleiotropic regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.518
IX84_00915
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.517
IX84_23165
Galactokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GHMP kinase family. GalK subfamily.
   
   0.510
IX84_28105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.505
IX84_04395
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.480
IX84_22885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.450
Your Current Organism:
Phaeodactylibacter xiamenensis
NCBI taxonomy Id: 1524460
Other names: KCTC 32575, MCCC 1F01213, P. xiamenensis, Phaeodactylibacter xiamenensis Chen et al. 2014, Saprospiraceae bacterium KD52, bacterium KD52, strain KD52
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.