STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX84_23425TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (942 aa)    
Predicted Functional Partners:
IX84_23420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.751
IX84_23260
PspC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
IX84_07165
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.499
IX84_02900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
IX84_08905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.464
IX84_29450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.464
IX84_04810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.462
IX84_13390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.462
IX84_02370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.461
IX84_14540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.456
Your Current Organism:
Phaeodactylibacter xiamenensis
NCBI taxonomy Id: 1524460
Other names: KCTC 32575, MCCC 1F01213, P. xiamenensis, Phaeodactylibacter xiamenensis Chen et al. 2014, Saprospiraceae bacterium KD52, bacterium KD52, strain KD52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.