STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX84_23505S23 ribosomal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)    
Predicted Functional Partners:
IX84_15295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.609
ilvA
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
       0.608
IX84_10105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.590
IX84_19780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
IX84_21165
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.563
IX84_07360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.539
IX84_04365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.447
IX84_17280
Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
IX84_12655
Polyprenyl glycosylphosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.433
IX84_00310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.431
Your Current Organism:
Phaeodactylibacter xiamenensis
NCBI taxonomy Id: 1524460
Other names: KCTC 32575, MCCC 1F01213, P. xiamenensis, Phaeodactylibacter xiamenensis Chen et al. 2014, Saprospiraceae bacterium KD52, bacterium KD52, strain KD52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.