STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX84_27030Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)    
Predicted Functional Partners:
IX84_02580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.804
IX84_07905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.804
IX84_02570
DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
   0.601
IX84_07900
DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
   0.601
IX84_17480
Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
   0.601
IX84_26905
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.601
IX84_02860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.599
IX84_28945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.599
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
   0.457
Your Current Organism:
Phaeodactylibacter xiamenensis
NCBI taxonomy Id: 1524460
Other names: KCTC 32575, MCCC 1F01213, P. xiamenensis, Phaeodactylibacter xiamenensis Chen et al. 2014, Saprospiraceae bacterium KD52, bacterium KD52, strain KD52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.