STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IV04_16805Periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)    
Predicted Functional Partners:
IV04_16810
Stress-response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.927
ompX
Membrane protein; OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
IV04_20130
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.519
IV04_11240
Cell division protein FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.508
IV04_22105
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
cpxP
Periplasmic stress adaptor protein CpxP; Repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
IV04_16815
Deoxyribonuclease YjjV; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.452
IV04_23375
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
IV04_14355
Biofilm formation regulator YbaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
IV04_07450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.426
Your Current Organism:
Serratia sp. Ag1
NCBI taxonomy Id: 1524467
Other names: S. sp. Ag1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.