STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VE03_00302NmrA domain-containing protein. (307 aa)    
Predicted Functional Partners:
VE03_01871
RRM domain-containing protein.
    
 0.524
VE03_01046
Uncharacterized protein.
    
 0.524
VE03_07993
Pre-mRNA-splicing factor CDC5/CEF1.
    
   0.523
VE03_07638
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.474
VE03_04081
Oxidored_FMN domain-containing protein.
   
    0.463
VE03_05706
RRM domain-containing protein.
    
 0.435
VE03_08212
Uncharacterized protein.
    
 0.425
VE03_03930
RRM domain-containing protein.
    
 0.425
Your Current Organism:
Pseudogymnoascus sp. 233421I1
NCBI taxonomy Id: 1524831
Other names: P. sp. 23342-1-I1, Pseudogymnoascus sp. 23342-1-I1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.