STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutIImidazolonepropionase. (406 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 
 0.994
hutH
Histidine ammonia-lyase.
 
  
 0.956
SEA04571.1
Tyrosine ammonia-lyase.
 
  
 0.909
SEA04828.1
GntR family transcriptional regulator, histidine utilization repressor.
 
 
 0.897
SEA60956.1
Agmatinase; Belongs to the arginase family.
  
 
 0.787
SEA04759.1
Formiminoglutamase; Belongs to the arginase family.
  
 
 0.774
SEA60622.1
N-formylglutamate deformylase.
  
  
 0.752
SEA04780.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
       0.621
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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