STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA23013.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (1601 aa)    
Predicted Functional Partners:
SDZ96755.1
Signal transduction histidine kinase.
  
 0.999
SDZ98849.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
 0.999
SEA07852.1
Signal transduction histidine kinase.
  
 0.999
SEA27386.1
PAS domain S-box-containing protein.
  
 0.999
SEA93084.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
 0.999
SEA27575.1
Serine/threonine protein kinase and signal transduction histidine kinase with GAF sensor.
  
 0.997
SEA75790.1
Signal transduction histidine kinase.
 0.996
SDZ92060.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
  
 0.995
SEA23276.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.995
SEA79456.1
Two-component system, NarL family, sensor histidine kinase BarA.
  
 0.995
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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