node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEA10341.1 | SEA38948.1 | SAMN04488051_101668 | SAMN04488051_10313 | Ankyrin repeat. | ATP-dependent helicase HrpA. | 0.951 |
SEA38948.1 | SEA10341.1 | SAMN04488051_10313 | SAMN04488051_101668 | ATP-dependent helicase HrpA. | Ankyrin repeat. | 0.951 |
SEA38948.1 | SEA72841.1 | SAMN04488051_10313 | SAMN04488051_105288 | ATP-dependent helicase HrpA. | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). | 0.764 |
SEA38948.1 | SEA89147.1 | SAMN04488051_10313 | SAMN04488051_10834 | ATP-dependent helicase HrpA. | Ribonuclease D. | 0.928 |
SEA38948.1 | SEA99216.1 | SAMN04488051_10313 | SAMN04488051_11220 | ATP-dependent helicase HrpA. | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.880 |
SEA38948.1 | fusA | SAMN04488051_10313 | SAMN04488051_1191 | ATP-dependent helicase HrpA. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.838 |
SEA38948.1 | rph | SAMN04488051_10313 | SAMN04488051_101664 | ATP-dependent helicase HrpA. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.782 |
SEA38948.1 | rpsD | SAMN04488051_10313 | SAMN04488051_110107 | ATP-dependent helicase HrpA. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.903 |
SEA38948.1 | rpsE | SAMN04488051_10313 | SAMN04488051_110101 | ATP-dependent helicase HrpA. | Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.768 |
SEA38948.1 | rpsK | SAMN04488051_10313 | SAMN04488051_110106 | ATP-dependent helicase HrpA. | Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.846 |
SEA38948.1 | rpsQ | SAMN04488051_10313 | SAMN04488051_11093 | ATP-dependent helicase HrpA. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.767 |
SEA72841.1 | SEA38948.1 | SAMN04488051_105288 | SAMN04488051_10313 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). | ATP-dependent helicase HrpA. | 0.764 |
SEA72841.1 | fusA | SAMN04488051_105288 | SAMN04488051_1191 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.683 |
SEA89147.1 | SEA38948.1 | SAMN04488051_10834 | SAMN04488051_10313 | Ribonuclease D. | ATP-dependent helicase HrpA. | 0.928 |
SEA89147.1 | SEA99216.1 | SAMN04488051_10834 | SAMN04488051_11220 | Ribonuclease D. | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.982 |
SEA89147.1 | rph | SAMN04488051_10834 | SAMN04488051_101664 | Ribonuclease D. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.994 |
SEA89147.1 | rpsD | SAMN04488051_10834 | SAMN04488051_110107 | Ribonuclease D. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.977 |
SEA89147.1 | rpsE | SAMN04488051_10834 | SAMN04488051_110101 | Ribonuclease D. | Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.752 |
SEA89147.1 | rpsK | SAMN04488051_10834 | SAMN04488051_110106 | Ribonuclease D. | Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.975 |
SEA89147.1 | rpsQ | SAMN04488051_10834 | SAMN04488051_11093 | Ribonuclease D. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.925 |