STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA59894.1Putative ABC transport system ATP-binding protein. (249 aa)    
Predicted Functional Partners:
SEA59921.1
Putative ABC transport system permease protein.
 0.997
SEA46668.1
Putative ABC transport system permease protein.
  
 0.994
SEA59389.1
Putative ABC transport system permease protein.
 0.982
SEA59867.1
HlyD family secretion protein.
 
   0.948
SEA86909.1
Putative ABC transport system permease protein.
 
 0.788
SEA28290.1
Lipoprotein-releasing system permease protein.
  
 0.735
SEA28353.1
Lipoprotein-releasing system permease protein.
  
 0.735
SEA97797.1
Putative ABC transport system permease protein.
  
 0.729
SEB04928.1
Duplicated orphan permease.
 
 0.728
SEA92460.1
Cationic peptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.721
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.