STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA57650.1Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. (524 aa)    
Predicted Functional Partners:
SEA57669.1
Polysaccharide export outer membrane protein.
 
 0.989
SEA57629.1
Receptor protein-tyrosine kinase.
 
 
 0.979
SEA58689.1
Uncharacterised nucleotidyltransferase.
 
 0.971
SEA57689.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.959
SEA30366.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
 0.885
SEA57883.1
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.875
SEA57713.1
Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily.
 
     0.872
SEA57739.1
Exosortase A.
 
     0.865
SEA57608.1
Uncharacterized protein, PEP-CTERM system associated.
 
     0.863
SEA58326.1
O-antigen ligase.
 
  
 0.854
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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