STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA66094.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
SEA99579.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
  0.598
SEA31407.1
PEP-CTERM protein-sorting domain-containing protein.
  
 
 0.514
SEA70080.1
Protein of unknown function.
  
 
 0.514
SEA89913.1
PEP-CTERM protein-sorting domain-containing protein.
  
 
 0.514
SEA08063.1
Iron complex outermembrane recepter protein.
    
 
 0.472
SEA23583.1
Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.472
SEA27549.1
Iron complex outermembrane recepter protein.
    
 
 0.472
SEA60132.1
Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.472
SEA71137.1
Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.472
SEA81524.1
Iron complex outermembrane recepter protein.
    
 
 0.472
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.