STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA80667.1Toxin CcdB. (98 aa)    
Predicted Functional Partners:
SEA80642.1
Antitoxin CcdA.
 
   
 0.958
SEA44185.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase.
  
     0.518
SEA46121.1
Predicted thiol-disulfide oxidoreductase YuxK, DCC family.
  
     0.484
SEA29036.1
Four helix bundle protein.
  
     0.452
SEA85034.1
Transcriptional regulatory protein, C terminal.
  
     0.436
SEA47852.1
Glutathione synthase.
  
     0.418
SEA77881.1
Histidine phosphatase superfamily (branch 2).
  
     0.406
SEA60106.1
Predicted arabinose efflux permease, MFS family.
  
     0.404
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.