STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA81368.1Type I restriction enzyme M protein. (725 aa)    
Predicted Functional Partners:
SEA81350.1
Type I restriction enzyme, S subunit.
 
 0.999
SEA81273.1
Type I restriction enzyme, R subunit.
 
 
 0.995
SEA10487.1
Type I restriction enzyme, S subunit.
 
 
 0.984
SEA10516.1
Type I restriction enzyme, R subunit.
 
 
 0.810
SEA81331.1
Hypothetical protein.
       0.782
SEA76865.1
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains.
  
  
 0.674
SEA81310.1
Zn-dependent peptidase ImmA, M78 family.
 
     0.618
SEA81291.1
Protein of unknown function.
 
    0.614
SEA81390.1
Hypothetical protein.
       0.563
SEA95508.1
Helicase conserved C-terminal domain-containing protein.
  
 
 0.509
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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