STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA81928.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (444 aa)    
Predicted Functional Partners:
SEA76911.1
Lipoprotein NlpD.
 
   
 0.746
SEA05583.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.733
SEA81913.1
Membrane protein YqaA, SNARE-associated domain.
       0.733
SEA06224.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.654
SDZ95860.1
Penicillin-binding protein 1A.
  
   
 0.515
SEA90941.1
Membrane-bound lytic murein transglycosylase D.
 
 0.510
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.434
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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