STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB02355.1Cu2+-exporting ATPase. (793 aa)    
Predicted Functional Partners:
SEB02330.1
Hypothetical protein.
 
   
 0.927
SEB02342.1
Cytochrome oxidase maturation protein, cbb3-type.
 
  
 0.911
SEB02367.1
Hypothetical protein.
 
  
 0.877
SEB02377.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.876
SEB02402.1
Cytochrome c oxidase cbb3-type subunit 2.
 
   
 0.870
SEB02413.1
Cytochrome c oxidase cbb3-type subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.863
SEB02319.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
 
   
 0.741
SEB02391.1
Cytochrome c oxidase cbb3-type subunit 4.
 
   
 0.712
SEA71630.1
Cytochrome c oxidase accessory protein FixG.
 
  
 0.703
SEA79054.1
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.654
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.