STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB03868.1Amino acid adenylation domain-containing protein. (1632 aa)    
Predicted Functional Partners:
SEB03881.1
Acyl transferase domain-containing protein.
0.999
SEB05509.1
Amino acid adenylation domain-containing protein.
 
0.999
SEB03893.1
Acyl transferase domain-containing protein.
 0.998
SEB05318.1
Phosphopantetheine attachment site.
 
0.997
SEB03902.1
Amino acid adenylation domain-containing protein.
 
0.994
SEB05403.1
Amino acid adenylation domain-containing protein.
 
 
0.991
SEB03935.1
Surfactin synthase thioesterase subunit.
 
 
 0.975
SEA40273.1
Uncharacterized protein, contains a NRPS condensation (elongation) domain.
  
 0.972
SEB03917.1
Putative ATP-binding cassette transporter.
 
  
 0.968
SEB03955.1
4'-phosphopantetheinyl transferase superfamily protein; Belongs to the P-Pant transferase superfamily.
 
 
 0.960
Your Current Organism:
Alkalimonas amylolytica
NCBI taxonomy Id: 152573
Other names: A. amylolytica, Alkalimonas amylolytica Ma et al. 2007, CGMCC 1.3430, DSM 18337, gamma proteobacterium N10, strain N10
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