STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR65098.1Type IV pilus assembly protein PilB. (562 aa)    
Predicted Functional Partners:
SFR65085.1
Type IV pilus assembly protein PilC.
 
 
 0.994
SFR65125.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
 
 0.962
SFR65119.1
Hypothetical protein.
 
 
 
 0.954
SFR65077.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
 0.952
SFR76803.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
 0.920
SFR87973.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
 0.902
SFR87167.1
Competence protein ComEA.
  
  
 0.784
SFR65091.1
Twitching motility protein PilT.
 
  
0.782
SFR65105.1
Hypothetical protein.
       0.689
SFR65113.1
Hypothetical protein.
       0.689
Your Current Organism:
Clostridium aminophilum
NCBI taxonomy Id: 1526
Other names: ATCC 49906, DSM 10710, [. aminophilum, [Clostridium] aminophilum, strain F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.