STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR75559.1L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. (293 aa)    
Predicted Functional Partners:
SFR75570.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
 0.999
SFR65402.1
Threonine dehydratase.
  
 
 0.908
SFR65225.1
Serine O-acetyltransferase.
     
 0.888
SFR78038.1
Homoserine dehydrogenase.
   
 
  0.887
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
     
 0.885
trpA
Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.881
SFR66391.1
Phosphoserine phosphatase.
   
 
 0.801
SFR77561.1
Aspartate aminotransferase.
    
  0.721
SFR91766.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
  0.720
trpC
Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
     
 0.708
Your Current Organism:
Clostridium aminophilum
NCBI taxonomy Id: 1526
Other names: ATCC 49906, DSM 10710, [. aminophilum, [Clostridium] aminophilum, strain F
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