STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR81825.1Predicted aconitase subunit 1. (403 aa)    
Predicted Functional Partners:
SFR81831.1
Predicted aconitase subunit 2.
 
 
 
 0.994
SFR81820.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.709
SFR81845.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.612
SFR81838.1
Tripartite ATP-independent transporter solute receptor, DctP family.
       0.553
SFR81850.1
C4-dicarboxylate transporter, DctM subunit.
       0.467
Your Current Organism:
Clostridium aminophilum
NCBI taxonomy Id: 1526
Other names: ATCC 49906, DSM 10710, [. aminophilum, [Clostridium] aminophilum, strain F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.